Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8284500-SRR8284501-SRR8984911/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  492,390,229
 Normal Paired: 478,849,442 (97.25%)
 Chimeric Paired: 3,803,844 (0.77%)
 Chimeric Ambiguous: 773,589 (0.16%)
 Unmapped: 8,963,354 (1.82%)
 Ligation Motif Present: 73,850 (0.01%)
Alignable (Normal+Chimeric Paired): 482,653,286 (98.02%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-26T20:36:51,985]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 252,312,362 (51.24%)
PCR Duplicates: 230,340,924 (46.78%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 327,110,450
Intra-fragment Reads: 140,292,954 (28.49% / 55.60%)
Below MAPQ Threshold: 53,050,813 (10.77% / 21.03%)
Hi-C Contacts: 58,968,595 (11.98% / 23.37%)
 Ligation Motif Present: 30,812  (0.01% / 0.01%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,784,090  (2.39% / 4.67%)
Intra-chromosomal: 47,184,505  (9.58% / 18.70%)
Short Range (<20Kb): 31,783,824  (6.46% / 12.60%)
Long Range (>20Kb): 15,400,520  (3.13% / 6.10%)